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Bioinformatics Self Learning Resources

Bioinformatics tools and learning resources relevant to sequencing data and other high-throughput genomic data analysis

In silico Studies

InSilicoStudy

Ingenuity Pathways Analysis (IPA)

Ingenuity Pathway Analysis (IPA) USC-logo  The core of the IPA knowledge base is sourced from biomedical publications and high-level findings that have been manually curated by their pool of PhD scientists.  Use IPA to interactively and quickly: 

  • Gain knowledge on genes and chemicals by browsing categorized and curated publications
  • Build and explore bio-molecule interaction networks supported by literature findings
  • Identify potential biological outcomes of custom networks
  • Generate testable hypothesis for your genes of interest

 

Get started with IPA video tutorials

 

Tutorials

 

2019 USC IPA onsite training

2020 USC IPA Webinar Training

 

Start using IPA

Qinsight

Qinsight USC-logo  is a sophisticated semantic literature search and mining engine that enables you to quickly identify the most relevant information in

  • PubMed abstract
  • PubMed/BioMed Central full text
  • Grants
  • Clinical trials
  • Biomedical research

 

Online resources

 

Start using Qinsight

BaseSpace Correlation Engine

BaseSpace Correlation Engine (BSCE, previously known as Nextbio) USC-logo features the world’s largest collection of curated and pre-analyzed public genomic data.  The web-based discovery platform provides a practical way for quick and comprehensive genomic data mining.

 

Online resources

 

Start using BSCE

Genevestigator

Genevestigator  USC-logo features a large collection of pre-analyzed biomedical and plant public genomic data.  The developmental stage analysis for selected species and bi-clustering analysis are particularly useful. 

 

Online resources

 

2020 Genevestigator Webinar Training

 

Start using Genevestigator