It looks like you're using Internet Explorer 11 or older. This website works best with modern browsers such as the latest versions of Chrome, Firefox, Safari, and Edge. If you continue with this browser, you may see unexpected results.
Both Partek Flow and CLC Gx can be used to analyze ChIP-seq and ATAC-seq data. The analyses are limited to essential tasks such as QA/QC, alignment and peak calling. For more comprehensive analysis, refer to open-source solutions below.