Bioinformatics Self Learning Resources

Both Partek Flow   and CLC Gx   can be used to analyze ChIP-seq and ATAC-seq data.  The analyses are limited to essential tasks such as QA/QC, alignment and peak calling.  For more comprehensive analysis, refer to open-source solutions below. 

Partek Flow ChIP-seq/ATAC-seq tutorials

• Webinar: ChIP-Seq or ATAC-Seq Analysis and Integration with Gene Expression Data

CLC Gx ChIP-seq/ATAC-seq tutorials

• ChIP-seq online tutorial
• ChIP-seq PDF tutorial

Start using Partek Flow / CLC Gx

USC local Galaxy servers are customized to include popular ChIP-seq/ATAC-seq analysis tools.

Galaxy tutorials

• Galaxy 101: Getting Started
• Galaxy ChIP-seq tutorial
• Galaxy ATAC-seq tutorial 

Start using USC local Galaxy instances