Bioinformatics Software: BaseSpace Correlation Engine

Featuring the world’s largest collection of curated and pre-analyzed public genomic data, BaseSpace Correlation Engine (previously known as Nextbio) is a web-based discovery platform that provides a practical way for comprehensive genomic data mining.

• Query with a gene, a phenotype, a pre-defined bioset (a GO term, a pathway), or your own genomic data set (differentially expressed genes).
• Body Atlas: Obtain expression levels in normal tissues and common cell lines.
• Disease Atlas: Find diseases, traits and conditions associated with a queried gene, SNP, or data set.
• Pharmaco Atlas: Discover compounds and treatments that affect your query.
• Knockdown Atlas: See which genetic perturbations affect your query.
• Genetic Markers: Explore novel biomarkers for a queried phenotype.
• Meta-Analysis: Cross-study comparisons of related genomic datasets.

USC has licensed BaseSpace Correlation Engine for the free use of USC faculty, students and staff.  The license consists of unlimited access to USC users.  To access this software:

1. Carefully read the BaseSpace Correlation Engine user policy
2. Complete and submit the BaseSpace Correlation Engine registration form
3. Follow the instructions in auto-reply email to set up your user name and password. 
4. Log in here to use BaseSpace Correlation Engine.

Help @ BaseSpace Correlation Engine

• Check out the FAQ page for comprehensive list of topics

• Documentation and technical notes

• Contact Illumina support
  • by phone: 888.809.4566
  • by email: customerservice@illumina.com

Help @ USC Libraries Bioinformatics Service

• Email us: nmlbio@usc.edu