Bioinformatics Software: CLC Genomics Workbench

CLC Genomics Workbench (CLC Gx) offers end-to-end data analysis solutions to a comprehensive set of next generation sequencing applications

• Resequencing and variant analysis
• Epigenomics (Bisulfite sequencing, ChIP-seq)
• Microbial genomics and metagonomics
• De novo assembly
• RNA-seq analysis and small RNA-seq

• CLC Gx has been frequently cited in Nature, Science, Cell, PLoS, as well as many other high-impact journals. 
• CLC Gx offers sophisticated solutions for various NGS applications
• Friendly user interface
• Wide selection of tools to build your own analysis pipelines

USC has licensed CLC Gx for the free use of USC faculty, students and staff. The license consists of TWO concurrent user seats. 

• Registration is mandatory for installing CLC Gx on your computer. Please submit the CLC Gx Installation Request Form.
• All users must carefully read and comply with the CLC Gx User Access Policy

System requirements:

• Minimum hardware requirement for general use: 16GB RAM and Intel i7-2600 or faster processor.
• Minimum hardware requirement for de novo assembly, metagenomics, and raw reads alignment:: 32GB RAM and Intel i7-6700 or faster processor.
• The computer must be connected to the USC network, either via Ethernet cable on campus or via USC VPN when using wireless (applies to both on- and off-campus wireless connections). 

Help @ Qiagen CLC Gx

• Getting started task-specific step-by-step tutorials
• User manual and FAQ
• Contact Qiagen support

Help @ NML Bioinformatics

• Email us: nmlbio@usc.edu
• Onsite training: check schedules