Partek Flow is a web-based application for the data analysis of next generation sequencing including RNA, small RNA, and DNA sequencing. With an easy-to-use graphical interface and the ability to build custom analysis pipelines or download existing ones, Partek Flow enables bench top researchers to carry out routine NGS data analysis using dozens of popular algorithms without writing codes or running command lines tools. The software features streamlined workflows for RNA-seq, DNA-seq, ChIP-seq, and Single cell sequencing data analysis that uses popular algorithms for NGS raw data QA/QC, alignment, visualization, as well as RNA quantification and variant detection.
Stand-alone Partek Flow servers: single server implementation on our workstation computers
USC has licensed Partek Flow for the free use of USC faculty, students and staff. To request your access:
Step 1. Apply for an USC HPC account following this instruction. If any of the following situations apply to you, proceed directly to step 2.
Step 2. Submit a NGS analysis request
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