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Partek Flow is a web-based application for the data analysis of next generation sequencing including RNA, small RNA, and DNA sequencing. With an easy-to-use graphical interface and the ability to build custom analysis pipelines or download existing ones, Partek Flow enables bench top researchers to carry out routine NGS data analysis using dozens of popular algorithms without writing codes or running command lines tools. The software features streamlined workflows for RNA-seq, DNA-seq, ChIP-seq, and Single cell sequencing data analysis that uses popular algorithms for NGS raw data QA/QC, alignment, visualization, as well as RNA quantification and variant detection.
Large memory workstation computers are capable of handling specific memory-intensive tasks.
The USC Libraries Bioinformatics Service DO NOT provide storage services. For every Partek Flow user, we provide a temporary space of 1TB for ongoing projects. When a project concludes, you must archive and export it (one-click in Partek Flow) to your own storage, such as a lab computer, a USB drive, etc. The project archive is in zip format and contains all input and result files. It can be easily restored in Partek Flow for further analysis.
Access Partek Flow
USC has licensed Partek Flow for the free use of USC faculty, students and staff.