Bioinformatics Computation and Consulting Center

DNA/Protein Sequence Analysis

• CLC Genomics Workbench

Statistical Analysis of High-throughput Data

• Partek Flow: sequence alignment and assembly of NGS data
• Partek Genomic Suite (Partek GS): Microarray/NGS
• CLC Genomics Workbench: sequence alignment and assembly of NGS data
• R and Bioconductor: statistical analysis

Comprehensive Functional Analysis

• Ingenuity Pathway Analysis (IPA): interactive pathway analysis
• GeneXPlain: protein knowledgebase (PROTEOME) and transcription factor prediction (TRANSFAC)
• BaseSpace Correlation Engine: gene set enrichment analysis
• GSEA: gene set enrichment analysis

Advanced Literature and Data Search and Mining

• BaseSpace Correlation Engine: public data mining
• Genevestigator: medical and plant gene expression data mining