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Bioinformatics Software: Ingenuity Pathway Analysis (IPA)

General Information

Time: Nov.28, 2012

Place: Aresty Auditorium, HSC

Registration is mandatory. 

Training Agenda

Wednesday Nov.28, 2012


1:00 - 3:00pm What's new in Ingenuity Pathway Analysis

  • Transcription Factor Prediction
    • Review known targets of each transcription factor in your dataset and compare their direction of change vs. literature
  • Directional Biological Processes
    • Interactive tree map display that enables facile exploration of function and disease hierarchy
    • Compares the direction of change of genes in your dataset (up or down regulation) to the expected effect of each gene (based on published evidence) to predict outcomes
  • Transcript Isoform Views
    • Visualize isoform level expression changes in uploaded and analyzed data from RNA-Seq and microarray
    • Explore each human locus, its spliced mRNA and protein products

3:00 - 4:00pm Introducing Ingenuity Variant Analysis

  • Identify causal variants from human resequencing data