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Bioinformatics Software: Partek Genomics Suite (PGS)

General Information

NML Bioinformatics is very pleased to host a two-day hands-on training event for Partek Flow and Partek Genomics Suite (PGS).

Major Topics:

  • Next-gen sequencing data analysis
    • RNA-seq analysis with Partek Flow
    • DNA-seq analysis with Partek Flow
  • Microarray data analysis
    • Gene expression analysis
  • Data visualization
    • PCA, heatmap, hierarchical clustering, dot plot, volcano plot, interaction plot, etc.)

Key Features:

  • Hands-on practices:
    Step-by-step instructions on analyzing microarray and next-generation sequencing data
  • Professional consultation:
    Bring your own data and go through analysis with the guidance of the Partek customer support team

Time: Nov.8-9, 2017

Place: McKibben Annex 249 (MCA249), HSC

Registration is mandatory. 

Training Agenda

McKibben Annex 249, HSC

Wednesday Nov.8, 2017

8:45am – 9:00am: Coffee/snacks provided by USC Libraries

9:00am – 12:00pm: RNA-seq Data Analysis with Partek Flow

  • Import fastq files
  • Pre-alignment QC
  • Trim reads
  • Alignment
  • Post-alignment QC
  • Quantification
  • Differential expression detection
  • Visualization (PCA, hierarchical clustering, volcano plot, etc)

12:00pm – 1:15pm: Lunch provided by Partek Inc.

1:15pm – 4:00pm: Live Demo of other NGS workflows

  • Single-cell RNA-seq data analysis
  • DNA-seq data analysis
  • ChIP-seq data analysis

Thursday Nov.9, 2017

8:45am – 9:00am: Coffee/snacks provided by USC Libraries

9:00am – 12:00pm: Overview of Partek Genomic Suite and live demo of the following analysis

  • Survival analysis
  • Advanced PCA analysis
  • Integrated miRNA-mRNA analysis
  • Gene expression time series pattern discovery
  • Correlating gene expression data with methylation status data
  • Gene lists filtering and comparison

12:00pm – 1:30pm: Lunch provided by Partek Inc.

1:30pm – 4:00pm: Q&A and Open Lab

  • Bring your own data

Training Materials

Day 1: