McKibben Annex 249, HSC
Wednesday Nov.8, 2017
8:45am – 9:00am: Coffee/snacks provided by USC Libraries
9:00am – 12:00pm: RNA-seq Data Analysis with Partek Flow
- Import fastq files
- Pre-alignment QC
- Trim reads
- Alignment
- Post-alignment QC
- Quantification
- Differential expression detection
- Visualization (PCA, hierarchical clustering, volcano plot, etc)
12:00pm – 1:15pm: Lunch provided by Partek Inc.
1:15pm – 4:00pm: Live Demo of other NGS workflows
- Single-cell RNA-seq data analysis
- DNA-seq data analysis
- ChIP-seq data analysis
Thursday Nov.9, 2017
8:45am – 9:00am: Coffee/snacks provided by USC Libraries
9:00am – 12:00pm: Overview of Partek Genomic Suite and live demo of the following analysis
- Survival analysis
- Advanced PCA analysis
- Integrated miRNA-mRNA analysis
- Gene expression time series pattern discovery
- Correlating gene expression data with methylation status data
- Gene lists filtering and comparison
12:00pm – 1:30pm: Lunch provided by Partek Inc.
1:30pm – 4:00pm: Q&A and Open Lab